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Other - Integrative Biomedical Informatics

Jiménez RC, Kuzak M, Alhamdoosh M, Barker M, Batut B, Borg M, Capella-Gutierrez S, Chue Hong N, Cook M, Corpas M, Flannery M, Garcia L, Gelpí JL, Gladman S, Goble C, González Ferreiro M, Gonzalez-Beltran A, Griffin PC, Grüning B, Hagberg J, Holub P, Hooft R, Ison J, Katz DS, Leskošek B, López Gómez F, Oliveira LJ, Mellor D, Mosbergen R, Mulder N, Perez-Riverol Y, Pergl R, Pichler H, Pope B, Sanz F, Schneider MV, Stodden V, Suchecki R, Svobodová Vareková R, Talvik HA, Todorov I, Treloar A, Tyagi S, van Gompel M, Vaughan D, Via A, Wang X, Watson-Haigh NS, Crouch S. Four simple recommendations to encourage best practices in research software. F1000Res. 2017; 6 . PMID: 28751965 . DOI: 10.12688/f1000research.11407.1. eCollection 2017..

2017

Original articles in indexed journals - Integrative Biomedical Informatics - Structural Bioinformatics

Piñero J, Bravo A, Queralt-Rosinach N, Gutierrez-Sacristan A, Deu-Pons J, Centeno E, Garcia-Garcıa J, Sanz F, Furlong LI. DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants. Nucleic Acids Research, 2017; 45: D833-D839 . PMID: 27924018 . DOI: 10.1093/nar/gkw943.

2017

Original articles in indexed journals - Integrative Biomedical Informatics

Roberto G, Leal I, Sattar N, Stewart R, Garcia-Gil M, Avillach P, Egger P, van Wijngaarden R, Ansell D, Reisberg S, Pasqua A, Pedersen L, Tramontan L, Mayer MA, Duarte T, Herings R, Coloma P, Lapi F, Sturkenboom M, van der Lei J, Schuemie M, Rijnbeek P, Gini R. Standardizing Diversity of Event Definitions in Federated Networks of Heterogeneous Health Data Sources: The "Component Algorithm Strategy". Pharmacoepidem DR S, 2016; 25: 165-166; S3

2016

PhD Thesis - Integrative Biomedical Informatics

Bravo A. BeFree: a text mining system for the extraction of biomedical information from the literature. Universitat Pompeu Fabra. November, 28th 2016. Thesis Director: Furlong LI.

2016

Original articles in indexed journals - Integrative Biomedical Informatics

Al-Shorbaji N, Bellazzi R, de Quiros FGB, Kochs S, Kulikowski CA, Lovell NH, Maojo V, Park HA, Sanz F, Sarkar IN, Tanaka H. Discussion of "The New Role of Biomedical informatics in the Age of Digital Medicine". Methods Inf Med, 55 (5): 403-421 . PMID: 27524112 . DOI: 10.3414/ME15-12-0005 2016.

2016

Original articles in indexed journals - Integrative Biomedical Informatics - PharmacoInformatics

Carbonell P, Lopez O, Amberg A, Pastor M, Sanz F. Hepatotoxicity prediction by systems biology modeling of disturbed metabolic pathways using gene expression data. ALTEX, 2016; 34 (2): 219-234 . PMID: 27690270 . DOI: 10.14573/altex.1602071.

2016

Original articles in indexed journals - Integrative Biomedical Informatics

Roberto G, Leal I, Sattar N, Loomis AK, Avillach P, Egger P, van Wijngaarden R, Ansell D, Reisberg S, Tammesoo ML, Alavere H, Pasqua A, Pedersen L, Cunningham J, Tramontan L, Mayer MA, Herings R, Coloma P, Lapi F, Sturkenboom M, van der Lei J, Schuemie MJ, Rijnbeek P, Gini R. Identifying Cases of Type 2 Diabetes in Heterogeneous Data Sources: Strategy from the EMIF Project. PLoS ONE 2016; 11(8): e0160648 . PMID: 27580049 . DOI: 10.1371/journal.pone.0160648.

2016

Original articles in indexed journals - Integrative Biomedical Informatics

Queralt-Rosinach N, Kuhn T, Chichester C, Dumontier M, Sanz F, Furlong LI. Publishing DisGeNET as nanopublications. Semantic Web, 7 (5): 519-528 DOI: 10.3233/SW-150189 2016.

2016

Original articles in indexed journals - Integrative Biomedical Informatics

Digles D, Zdrazil B, Neefs JM, Van Vlijmen H, Herhaus C, Caracoti A. Brea J, Roibas B, Loza MI, Queralt-Rosinach N, Furlong LI, Gaulton A, Bartek L, Senger S, Chichester C, Engkvist O, Evelo CT, Franklin NI, Marren D, Ecker GF, Jacoby E. Open PHACTS computational protocols for in silico target validation of cellular phenotypic screens: knowing the knowns. MEDCHEMCOMM, 7 (6): 1237-1244 DOI: 10.1039/c6md00065g 2016.

2016

Original articles in indexed journals - Integrative Biomedical Informatics

Queralt-Rosinach N, Piñero J, Bravo A, Sanz F, Furlong LI. DisGeNET-RDF: Harnessing the Innovative Power of the Semantic Web to Explore the Genetic Basis of Diseases. Bioinformatics, 2016; 32(14): 2236-8 . PMID: 27153650 . DOI: 10.1093/bioinformatics/btw214.

2016



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