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Original articles in indexed journals - Computational RNA Biology

Gonzalez-Vallinas J, Pages A, Singh B, Eyras E. A semi-supervised approach uncovers thousands of intragenic enhancers differentially activated in human cells. BMC Genomics, 2015; 16. PMID: 26169177 . DOI: 10.1186/s12864-015-1704-0.

2015

Original articles in indexed journals - Computational RNA Biology

Kremsky I, Bellora N, Eyras E. A Quantitative Profiling Tool for Diverse Genomic Data Types Reveals Potential Associations between Chromatin and Pre-mRNA Processing. PLoS One, 2015; 10(7): e0132448. PMID: 26207626 . DOI: 10.1371/journal.pone.0132448. eCollection 2015.

2015

Original articles in indexed journals - Computational RNA Biology

Alamancos GP, Pagès A, Trincado JL, Bellora N, Eyras E. Leveraging transcript quantification for fast computation of alternative splicing profiles. RNA, 2015; 21 (9): 1521-1531
. PMID: 26179515 . DOI: 10.1261/rna.051557.115 SEP 2015.

2015

Original articles in indexed journals - Computational RNA Biology

Smedley D, Haider S, Durinck S, Pandini L, Provero P, Allen J, Arnaiz O, Awedh MH, Baldock R, Barbiera G, Bardou P, Beck T, Blake A, Bonierbale M, Brookes AJ, Bucci G, Buetti I, Burge S, Cabau C, Carlson JW, Chelala C, Chrysostomou C, Cittaro D, Collin O, Cordova R, Cutts RJ, Dassi E, Genova AD, Djari A, Esposito A, Estrella H, Eyras E, Fernandez-Banet J, Forbes S, Free RC, Fujisawa T, Gadaleta E, Garcia-Manteiga JM, Goodstein D, Gray K, Guerra-Assunção JA, Haggarty B, Han DJ, Han BW, Harris T, Harshbarger J, Hastings RK, Hayes RD, Hoede C, Hu S, Hu ZL, Hutchins L, Kan Z, Kawaji H, Keliet A, Kerhornou A, Kim S, Kinsella R, Klopp C, Kong L, Lawson D, Lazarevic D, Lee JH, Letellier T, Li CY, Lio P, Liu CJ, Luo J, Maass A, Mariette J, Maurel T, Merella S, Mohamed AM, Moreews F, Nabihoudine I, Ndegwa N, Noirot C, Perez-Llamas C, Primig M, Quattrone A, Quesneville H, Rambaldi D, Reecy J, Riba M, Rosanoff S, Saddiq AA, Salas E, Sallou O, Shepherd R, Simon R, Sperling L, Spooner W, Staines DM, Steinbach D, Stone K, Stupka E, Teague JW, Dayem Ullah AZ, Wang J, Ware D, Wong-Erasmus M, Youens-Clark K, Zadissa A, Zhang SJ, Kasprzyk A. The BioMart community portal: an innovative alternative to large, centralized data repositories. Nucleic Acids Res, 2015; 43 (W1): W589-W598. PMID: 25897122 . DOI: 10.1093/nar/gkv350 JUL 1 2015.

2015

Original articles in indexed journals - Computational RNA Biology

Agirre E, Bellora N, Allo M, Pages A, Bertucci P, Kornblihtt AR, Eyras E. A chromatin code for alternative splicing involving a putative association between CTCF and HP1 alpha proteins. BMC Biology, 2015; 13. PMID: . DOI: 10.1186/s12915-015-0141-5 MAY 2 2015.

2015

Original articles in indexed journals - Computational RNA Biology

Coelho MB, Attig J, Bellora N, König J, Hallegger M, Kayikci M, Eyras E, Ule J, Smith CW. Nuclear matrix protein Matrin3 regulates alternative splicing and forms overlapping regulatory networks with PTB. EMBO JOURNAL, 34 (5): 653-668. PMID: 25599992 .

2015

Original articles in indexed journals - Computational RNA Biology

Sebestyen E, Zawisza M, Eyras E. Detection of recurrent alternative splicing switches in tumor samples reveals novel signatures of cancer. Nucleic Acids Research, 2015; 43 (3): 1345-1356. PMID: 25578962 . DOI: 10.1093 / NAR / gku1392..

2015

Original articles in indexed journals - Computational RNA Biology

Alló M, Agirre E, Bessonov S, Bertucci P, Gómez Acuña L, Buggiano V, Bellora N, Singh B, Petrillo E, Blaustein M, Miñana B, Dujardin G, Pozzi B, Pelisch F, Bechara E, Agafonov DE, Srebrow A, Lührmann R, Valcárcel J, Eyras E, Kornblihtt AR. Argonaute-1 binds transcriptional enhancers and controls constitutive and alternative splicing in human cells. Proc Natl Acad Sci U S A, 2014; 111 (44): 15622-15629. PMID: 25313066 . DOI: 10.1073/pnas.1416858111.

2014

Original articles in indexed journals - Computational RNA Biology

Raj B, Irimia M, Braunschweig U, Sterne-Weiler T, O'Hanlon D, Lin ZY, Chen GI, Easton LE, Ule J, Gingras AC, Eyras E, Blencowe BJ. A Global Regulatory Mechanism for Activating an Exon Network Required for Neurogenesis. Mol Cell, 2014. PMID: 25219497 . DOI: 10.1016/j.molcel.2014.08.011.

2014

Original articles in indexed journals - Computational RNA Biology

Gromak N, Dienstbier M, Macias S, Plass M, Eyras E, Caceres JF, Proudfoot NJ. Drosha Regulates Gene Expression Independently of RNA Cleavage Function (vol 5, pg 1499, 2013) . Cell Rep, 2014; 7 (5): 1753-1754. PMID: 24360955 . DOI: 10.1016/j.celrep.2014.05.047 JUN 12 2014.

2014



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