Bioinformatics Services

The Bioinformatics Unit (BU), led by Júlia Perera, is part of the MARData from the scientific and technical services of the Hospital del Mar Research Insitute. We provide computational support to process high-throughput omics data (eg. NGS, microarrays) with a special focus on translational research. Each type of omics data provides a complementary medical perspective of a biological system or an individual. Therefore, it represents a major opportunity to understand the biological basis of complex diseases, sensitivity and resistance mechanisms to treatments, as well as for the development of predictive biomarkers. We have an extensive background in the field of cancer research but have also been involved in projects related to COVID, chronic urticaria, and major depressive disorder, among other diseases. Our current interest is to integrate multiple NGS data for the detection of patterns/signatures preserved in different pathologies

The facility currently maintains standardized data processing pipelines for NGS analyses (eg. QC, RNASeq, WES, ChIP-Seq, ATAC-Seq, single cell, differential expression), but also performs advanced analysis tailored to each project (eg. predictive algorithms, biomarker discovery, WGCNA, deconvolution, multi-omics integration). Moreover, we can provide training and consultations in bioinformatics, biostatistics and experimental design. You can visit our GitHub page at https://github.com/margenomics.

Research projects

News & activities

GRIB hosts guest researcher Carlo Colantuoni for a seminar and workshop on multi-omics data analysis

GRIB will host Carlo Colantuoni (Johns Hopkins University) on April 21st at PRBB for a seminar and hands-on workshop on multi-omics data analysis. The...

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Broad collaboration produces high-resolution atlas of developing human brain

Johns Hopkins & GRIB researchers have enhanced a cellular road map of how the brain forms and adapts early in life, bringing together nearly...

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Gabriel Santpere co-first author in the new paper published in Nature:”Adaptive evolution of gene regulatory networks in mammalian neocortex”

In the new paper published in Nature:" Adaptive evolution of gene regulatory networks in mammalian neocortex", Gabriel Santpere is the co-first author. The paper...

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New preprint on BioRxiv: “Oncogenes and tumor suppressor genes are enriched in stop-loss mutations generating protein extensions”

The Evolutionary genomics group has done another preprint on bioRxiv. Analysis of stop-loss mutations in > 20,000 cancer samples shows that several oncogenes and...

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GRIB has contributed in a new study:”Human-specific features of the cerebellum and ZP2-regulated synapse development”

This new study, led by Suel-Kee Kim, Adriana Cherskov, and Nenad Sestan, on human-specific cerebellar biology and the unexpected role of ZP2. GRIB has...

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New preprint on BioRxiv by Evolutionary genomics group

A new preprint on bioRxiv: "Evolutionary emergence and preservation of microproteins encoded by upstream ORFs"...

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